Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10016505 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10016505 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7020
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7020

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100165052	F001106	AGGAG	MSFETLKVSELKKIAEDFAVDTDGLKNKADIIAALAEEGVTWSVYNKTMDKMEEEDMPVEILPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSNEQAQAIFDKEEGFRLATPREVQEYYN*
Ga0129333_100165053	F005054	N/A	MAEILIRSQSPITHQVFWNGDVTVPDSAPLVYLYDITQDPAINPAISPTQLLTMLTSVADENNIGSYVVNIPYQYTDRNRTLRVRWIYNISGNTVTKDDEVFVVTPYVDFNHVQDLGFSMDSSDPNYKSYKELIKSERYARKQIEQYTGQKFYLYDDLYLVYGYDSDTLPVPAKIHQLHELYARDILLLDTINNINNWNYPVEISETGYGIKINRANLLDNTVYTANGMVPPSIHDYSGIFQSGVPYKVQGRFGWEKVPNAVELAGVELMKDYFAKDTAWRNKYIKNISTFDWDFEFTSDAYAGTGNAYADKLLADYVIVSKVEII*
Ga0129333_100165054	F001229	N/A	MQLDVYRQSEIQDPDTGAIVREWNYYKTVPCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0129333_100165055	F001900	GGA	MLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYEAAVISKLTTNAQFKALFTRTMFDQINTDFGNYIDALARSKPKSLHHVYEWKRSGNKTARLFKLNKISEDGLSFRINYEFLPSRSMVPAPSGRRRHMFVNKASVMEAGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSASTNQFTLAHSRFFSGNLVNASIKNSGFQRIFNSSITKALRVPNNIKKVQYSFSANAIRSQADAALVASFGGAM*
Ga0129333_100165056	F000258	GGAGG	VTADYKLDAMLELRKYLWKELYTRNIFNEEDYWSDNLNENIVPIIPVQQVAEMNQFLSGKKHIVYDKVGLSYEDNWLICCEQIMFTIYSTSVSEINEIRNYMTDEFRRMDESARDINKWTGLSNKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDNTGRFL*
Ga0129333_100165059	F005479	N/A	MPELINTFQALKKKEHDARKFQASLKGVDIGEYQESSNKGSSFEEIELRAAGIHANPNDVVSLQGRFAAQAGFGIGEGLGYVKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10016505

Overview

Ecosystem & Geography

Associated Families

Sequences