NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10021971

Scaffold Ga0129333_10021971


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10021971 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6058
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F098938Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_1002197110F098938N/AMHTAAGFLDSFVQDELKCRCLTEESFGAPLDNEENDVPLYDMYNRGLTLCEQGLERNPLNLEGQRPGTTG
Ga0129333_100219714F000973N/AMATFGIRKGLEDVAHELKGIRNILASMWHSRYQNDETDLLNPEAFADEYISTEECARRLGVSDQTLRNWISLGRHNAQKGWVEGIHYVNINPDPGKKGVIRIPWNHLIQSFAKNKKPEISDFYKGPMYKSANGNNQ*
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Institute for Fundamental Biomedical Research
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