NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10079421

Scaffold Ga0129333_10079421


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10079421 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3045
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043476Metagenome156N
F075872Metagenome118N
F078327Metagenome116N
F090574Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0129333_100794212F075872N/AMSREHQFSHYYTVPHNGGTMDIEVYIQYESTNWDQDSTGDIDILDAWVSSFKYIKLDIATPEVKVGEVPPVLFEWKKAVMSDSETESAQAWLDQTPLDFFHDAAFANECQEWQEPPLSLQP*
Ga0129333_100794213F090574N/AMTPYERDEAMMSLSHHNMQLGKVVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQDMQNAYNLGVTEERKKHEHLNQTNQ*
Ga0129333_100794215F043476AGGAGGMLTLPTNIDRAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALESIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDVPDFNHDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR*
Ga0129333_100794218F078327N/AMANLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKENNELNEEDDTYTF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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