Basic Information | |
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Taxon OID | 3300010354 Open in IMG/M |
Scaffold ID | Ga0129333_10169166 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1999 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 39.2637 | Long. (o) | -76.0017 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006062 | Metagenome | 382 | Y |
F015721 | Metagenome | 252 | N |
Protein ID | Family | RBS | Sequence |
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Ga0129333_101691661 | F015721 | N/A | SRPAEIVVATYLLNLGHTVTLPKRRMARDFADRAEYADKGDIYASGKRIEVKHIKHDFQYEAWPFETAAICAKKSFDAADPRPDFYYIVNASLTVAALVDVKTTFPDWLVRKITDKERGYDYDVYAVTPEYLGWRYIDFEERL* |
Ga0129333_101691663 | F006062 | GGA | MKRIFPTGTPPEQIANAVLRMVSGLPNKPLAVTVELWKKPRTNQQNAYLWGVVYPAIMEGGGEALGGFTRDDVHEWLLGECFGWEVLEGFGRKRMRPLKRSSALNKQEFSDYLTFIDTKCAEFGIVIPEPYEPA* |
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