NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10175936

Scaffold Ga0129333_10175936


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10175936 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1955
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017129Metagenome / Metatranscriptome242Y
F042337Metagenome158Y
F090305Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_101759363F090305N/AMLTIDNIEKLNDTMLGYWKVSEAIASRPTKWCMTEHYCIRMHRNGEAAAILIWRNINPLTKQYHVDVCYDDFTNKIYEGAFSKRVIMDKGHFLANMMGYIKAEHALRNKK*
Ga0129333_101759366F042337AGGMELVIDGITKIMHRTYHGRKIEDIRIDKGSGARNASYVFTFPPIDSIDGWNKKMEVYLCKYPTTNGNYELFVMGLHGVTCYYLEREEIKDFEKFHNYMISTMFKAKTYWETI*
Ga0129333_101759367F017129GAGMYNNVDDIQAYEALEQRRAEIQLDPKYQQWVKELKVSQSYVDPEGTIKANYLNDQYSFSTSEPKSGFLNYLKLKGIWS*
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