NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116237_10079139

Scaffold Ga0116237_10079139


Overview

Basic Information
Taxon OID3300010356 Open in IMG/M
Scaffold IDGa0116237_10079139 Open in IMG/M
Source Dataset NameAD_USDEca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3479
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.84Long. (o)-89.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006895Metagenome / Metatranscriptome362Y
F033805Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0116237_100791391F033805N/AMKNLKLELFNFKKNLSLDQEEVSVIIEGHMNACNDLSEKTIVNSLNERLKPYTYDKSVKSLLENLNDDMKNYELLYELKNLYNVLNSKN
Ga0116237_100791392F006895N/AMFLVINIFEITGKVYLIYMYMIGERFNFEDVFFRDLTVCVLDTLEGQVNWINRFSTGDVHVKVPFYYSMTGDERFLLDSFSDDIVSQNRFVELNTDMIPRGHLTMTGFNIKSDEFANPNVWLKMVVEDKAEIRRVLAKVRAVPMSISYELSIILSSEIDIFKCSQAVMDTLWLYRFMYFEHNFMNIDAVMILPDTNQIEINREKNLTSDNTIKLTVSFEVHTYYPAFRKDRIGSNSSMVSGSTSGTLEGSEIGGVYDPNYIIVPKRTRWFNNILKSRERSFIKTNNSNAEDPNENN*
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