NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126370_11002501

Scaffold Ga0126370_11002501


Overview

Basic Information
Taxon OID3300010358 Open in IMG/M
Scaffold IDGa0126370_11002501 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)762
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000825Metagenome / Metatranscriptome874Y
F027638Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0126370_110025011F000825N/AMPARAEWKSYINRELGFSFMAPGEVKASVGTFRGAIAGPRQTIVYRSVEDNIEYKVTVMSFVQAQAEGATLLGEREYMFQDGKKVLVDTFARVEPGKDSVYGRKIVVDLPGNKGRSTGAFYFTKGRLISLEATVLPANGDFASPDPGR
Ga0126370_110025012F027638N/AGRATAAFYFINGRIISLQATVLPANGDYDTPEMGRFVDSITFFTVRAEDDASELPVPPK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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