NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126376_10367394

Scaffold Ga0126376_10367394


Overview

Basic Information
Taxon OID3300010359 Open in IMG/M
Scaffold IDGa0126376_10367394 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1282
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015130Metagenome / Metatranscriptome257Y
F057577Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0126376_103673941F057577GGAGGMRATLTGVAFASALTLVCYQSAAAVPADAGAMKRTATVISTVQEAQFYARPTRHGIIKCYRQFI
Ga0126376_103673942F015130AGGAGMAEMLWITMLLIVVTIGGILAFLYYVRITQTVDNEKKIKLQGVVKHDWLPTGRIDFTTRFEDVGDQSKDKPGEFKLLVEERRIVESIAGNENLEIQWRLATLSEAKTVISQYHKYLTENALIKSIPEFFASLPAPHSVSSPQTNGKENTAEA*
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