NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126372_10116766

Scaffold Ga0126372_10116766


Overview

Basic Information
Taxon OID3300010360 Open in IMG/M
Scaffold IDGa0126372_10116766 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2051
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F008431Metagenome / Metatranscriptome333Y
F069415Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0126372_101167662F001528AGGAGMSEKNQIVVVLIVALVLGALVDRSTALKIAAGVVLLWSLQNQPTVFECIRKLFSFVQRRPSVREYRGGVTTFKAS*
Ga0126372_101167663F008431GGAGVARGAATRRRRGAQESAKTNGEERFFLATASRTGEVPTLGRECTTEAEAIIDAFREKVNFYRVTEFQTRADIGRSGEPILRKETFRKNNTAS*
Ga0126372_101167664F069415N/ACALAARARLRAQTRTQLQEGTDGAANAKPKWFDRYDVFMILTVIVIYASLSGLLRHAGLSEGTMGILPLVLFAVGILLKPRAVRFIESRRLGRAAGSHDESSREAARRESDGERKETVERCQ*
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