NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126372_10268888

Scaffold Ga0126372_10268888


Overview

Basic Information
Taxon OID3300010360 Open in IMG/M
Scaffold IDGa0126372_10268888 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans → Hyphomicrobium denitrificans 1NES1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021411Metagenome / Metatranscriptome219Y
F054390Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0126372_102688881F054390N/AMSNAEFQRHPRMSLRPEQHSHIAAAYDKAAFDTSLPGYTRAAFAKKAAWFRLLARIGEKKEQAALAKPKDPFGFIAAMH*
Ga0126372_102688883F021411AGGMATPVEVREEVDVVSVDPLFVERQRNRYASRAVAYVVWLNGIAAIGLLVGLPHASLPADVLKRFADAMVVFGVGSLFGLASAFFAYVGRTLRLEHPDLFPWRRPLRWLAILAAVVGALCFIGALNKARVAVQKAPVSIPVPITQPETTNPQP*
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