NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126378_10077450

Scaffold Ga0126378_10077450


Overview

Basic Information
Taxon OID3300010361 Open in IMG/M
Scaffold IDGa0126378_10077450 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3209
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064612Metagenome128Y
F103713Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0126378_100774503F103713GAGMRTEMRYDVGTTFKHPWIRNNVDKKPITCIVTKTRDGVIYFRGYRADRTLTSWIGELSKGVFETHFVLRNALRTGER*
Ga0126378_100774506F064612N/AMRTRHLKALLIIASLLISTAPLYAQPQQQNVAKLKADAQKVVSIISGDKAKTENYCEARDIATQIVQAEQQKDNEKVEELLTNKLIEQQKNLGSEYLALMKSVRDANLTLKDGQEIESMFDSLDESCPH*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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