NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126377_10136834

Scaffold Ga0126377_10136834


Overview

Basic Information
Taxon OID3300010362 Open in IMG/M
Scaffold IDGa0126377_10136834 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2285
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001384Metagenome / Metatranscriptome709Y
F072106Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0126377_101368341F001384N/AGELEGLVGCACYAYSHFEMDPEWRYLLADHIRTEAGHGWGYIQQGNSLNPKRDHSQPDPEFEREYGLVPRVEHLKLQRRDFLSYLIAGNLWPYGHCTAATIQSILITTPKVLDFEERVVQAEERGHHNAILQKLHDYVWELIEQYGEASIRKRIAAIDAQALNSCSRTIFDPARRNFLRKYFNVPLDNVRKFPEWREYLYLNVLGFPPEPVFIENWPQEIPQPKAA*
Ga0126377_101368343F072106AGAAGGMADIRGVGKKITYSDDNPISEWVENLRRGRGAQKREPKDDAERELLGRWLAYRGRDELENIVGSACYAYTHFDMDPEWRLLLADHIRTEAGHGWGYIQQGNALNPKRDHTQPDPDFEREHGLLPRMEHHKLMKRDFLSYLIAGNLWPYGHCTAATIQSILITTPKVLDFEERVVHAEERGHHNAILQNLHDYVWELNPQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.