NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126377_10338650

Scaffold Ga0126377_10338650


Overview

Basic Information
Taxon OID3300010362 Open in IMG/M
Scaffold IDGa0126377_10338650 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1496
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001362Metagenome / Metatranscriptome714Y
F017201Metagenome / Metatranscriptome242N

Sequences

Protein IDFamilyRBSSequence
Ga0126377_103386501F017201N/ALLLVLLFVFLYGPDKLVETVSPGYMCNQSAPEAIKVARRDAVGLLSFGDWYATRAINLNVPAPLLLSIFKMDTATNRKVGRVTYCTGIVTVGSSPEFEAAAEQAIIDYAKKDAKDAARYKFLVEPALAAYRKTWGQLPRQALKVQYSAQILDNGNWSIQGVSVSPLSTR*
Ga0126377_103386503F001362N/ALELLEASIDGCTEAIMLAYGFKTELLVQLVSAGLATATIEHMAVGGRRVKVIRMRITAAGRRALSKLRWP*

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