NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126377_10414644

Scaffold Ga0126377_10414644


Overview

Basic Information
Taxon OID3300010362 Open in IMG/M
Scaffold IDGa0126377_10414644 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018142Metagenome / Metatranscriptome236N
F034278Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0126377_104146441F034278N/AKPSVAEYLMTLAASYLELAERALRLRKPVTAVGRQHIKVVQKE*
Ga0126377_104146442F018142GGCGGMASARLAPRLLWGQLVHELRPSRVRVSAVEYKSHLIEAFEDQPGRWFAYFRRLDGQNITGAESNSLRTPSARYSKEDAIGFAKEVIDGWPDS*

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