NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0134066_10010794

Scaffold Ga0134066_10010794


Overview

Basic Information
Taxon OID3300010364 Open in IMG/M
Scaffold IDGa0134066_10010794 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003875Metagenome / Metatranscriptome464Y
F016860Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0134066_100107942F003875GAGGMAWRKTATFHAPIEVLVLTCDVCACDIGHEDERRPRAHFQLSRHPNPGAIDDQEPAVVICSRECLRAFVANASGPDRAPPMPPPSVVGKKKGR*
Ga0134066_100107944F016860AGTAGMAERRRKQSAKVNPLPPGSPLGTFVTGAPQQYVHDTTANIYKNTPLALLRPKWDQLLAEARSLSSAGQHAIAIIIAAAAGEWATELVLERLMDAVKDHSKSVRDLIDMSERLLVTWSFEGDRVREAFHDLTGEHPDRQSWWGDWMWSRRQRHDIAHRGVLRLMPP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.