NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126379_10006669

Scaffold Ga0126379_10006669


Overview

Basic Information
Taxon OID3300010366 Open in IMG/M
Scaffold IDGa0126379_10006669 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7808
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001327Metagenome / Metatranscriptome721Y
F051616Metagenome143Y
F104208Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0126379_100066694F051616N/AVTILLYLVALFLTVATVWLLSLFLYTTQTKQTDPQSVWVLVIVGIPFVMLIYFGFAFLISDTISDGTAWLTARKEELSFSESVVLAVSYVGLSGWLLLRWRKPTGPPTRILGAIIATVIIVIIVGVIWNAHHDHIF*
Ga0126379_100066695F104208N/AMRLGGLLIKINSQSRSAHIMRRPRFTHPVTADHRREIDIRVLTKAGAFKRPMRFPFQRIETARDHITLFSLGNRQRPPQIIAVQWRPMTFGRKPFFICPRCHARRVFLYFDTLQAYCRVCADLWYWCQRKHRRTRLLHRSHKLRLALGDQFGKPGDQFPPRPYLQKRTRYRRTIAALKHIEQQYLNIIATDRRYLDRERDELGRYLPREPNTNDPSADDLGA*
Ga0126379_100066696F001327GAGMSGRVNWSRIKQRSLMRRQGVEDIRGATSVAISPPKQPRRKLSKTELRQQAAAAFLAWRAGQTKDK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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