NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126379_10102947

Scaffold Ga0126379_10102947


Overview

Basic Information
Taxon OID3300010366 Open in IMG/M
Scaffold IDGa0126379_10102947 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2546
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002500Metagenome / Metatranscriptome553Y
F095237Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0126379_101029471F095237GAGLSGDFDFNAALKELDKTETHLVVRVEFRRWGKPMTIIQG
Ga0126379_101029474F002500N/ALAITLGDIALDLISALIGMAVTLPVTYLVVDRIIAGNEKKRLIPVARLAKERLRSKLGVGFLTTFLITLVIDITTAVREQAPIPKEVLTLHIEKLKTAQSDLEVLLGIYNSVLDVEIARLTSDVILQIEHLQEDFEYLAEMPMRPPTQSHASHIEQLLLRTVQMTKEELVALGADNQQIRALEEWLIQFTRDKRPAQKLEQPIEVKGGHTIR*
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Institute for Fundamental Biomedical Research
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