NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129336_10238064

Scaffold Ga0129336_10238064


Overview

Basic Information
Taxon OID3300010370 Open in IMG/M
Scaffold IDGa0129336_10238064 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y

Sequences

Protein IDFamilyRBSSequence
Ga0129336_102380641F002060AGGMDYTSITIALLAAVFSGMGTAIVAGLKEAKKEKRRQVEREQDHLKLEIKDLKIALYQLEKELTDWKDKYYNSIQELIQVKAELENALV
Ga0129336_102380642F000671GAGGMEKILCYSCNKTKNKLDVKKSTLLPINLLMCETCITSKFEPRWVIILAGRSNGADHVKEYIQKRRYIGNEVSASELLV*
Ga0129336_102380644F000473N/AKSKERQQEHFKHGINWWTGEPAKPVFYTEEMKKRVHAIPKPALLLMDVVKYPDFLALRLYEDNFIQFDGTKKEMVIDYVSKVKKLIESYGVRCELEGVPSERTL*
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