NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134125_10111720

Scaffold Ga0134125_10111720


Overview

Basic Information
Taxon OID3300010371 Open in IMG/M
Scaffold IDGa0134125_10111720 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3041
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005830Metagenome / Metatranscriptome389Y
F009215Metagenome / Metatranscriptome321Y
F026078Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0134125_101117202F026078AGGAGMRTFFGLVISVVVAATIWWTFPIQAKQQFDHDSIDPLAMTGTVTNLLPEVHYDHGFVFPEQQ*
Ga0134125_101117203F005830AGGAGMNKEWVPERSRVEHANDARITFTIALHGDHAWEMLLEDSKNCHSISHGCATDNPQDWEDIIAPALCRLFPDDRLRLATKASIDAPGGSCAGVALYDPPLCSPATRAEDNLSDGWRKQAIAA*
Ga0134125_101117205F009215GAGGMENRKSHPVNEIKVVDDHGKVYTVFQYQEGTEKPSLKWIKAGPTWFGLSDGTTVDSIDDNTFKIPMIDKVLRRRP*
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