Basic Information | |
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Taxon OID | 3300010371 Open in IMG/M |
Scaffold ID | Ga0134125_11705336 Open in IMG/M |
Source Dataset Name | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 685 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Kellog Biological Station, Michigan | |||||||
Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F048039 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0134125_117053361 | F048039 | AGGAG | VEKFKRECLKSYSVTRLGEVIKEFDLPSFQSLTEAQRENKMIDAVGQAVAQAFIKSATVMGNTVHNAVVKTFAEGTFLGCMGPCYIQPDQMQYVPLEVSMAAALSAQNSQAGTSNSQVPPQITATASAATTALVYTTTSPIPIAIQGGSASGFPKGWDPTTGYGMHPDFFTTPVKGQFNASVSQPMTS* |
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