Basic Information | |
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Taxon OID | 3300010374 Open in IMG/M |
Scaffold ID | Ga0114986_1002286 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4670 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003784 | Metagenome | 468 | Y |
F016642 | Metagenome | 245 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114986_100228610 | F003784 | GGAGG | MYDDDRKRLGHDDTDFAAYGLSHLAPGQDEPDNTDTPTTNPLADHAAVTGYRGSGVSTEDLTSFIESFASLRASRVKGLGHDQYSHAKGQKFESFTTSDNIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD* |
Ga0114986_10022867 | F016642 | GAGG | MIVRLSRDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNDLHPRRAKLPDVGVNFEVRTVRTRGSIPFWSKDSGKIIVGTKILDEDYYSQVEVYGWCNPEEYATMQYRDEAIGGWRVPVSELKEFQ* |
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