Scaffold Ga0114986_1042609

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114986_1042609

Scaffold Ga0114986_1042609

Overview

Basic Information
Taxon OID	3300010374 Open in IMG/M
Scaffold ID	Ga0114986_1042609 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	828
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)		Depth (m)	2500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114986_10426092	F030767	GAGG	MATYKTKCRLCARITEHIERVVTDNLPPYVKTLQCVKCGVMGVVMMEDLKDA*
Ga0114986_10426093	F029049	N/A	AVVILDRSQEITAHRVGLERTIIRNADPSDASNFGQKYSNWHELVWQEAESAGAEIAVAAYFGDFGFKPKIDNGHDTADVGENIEVKWTKHGNGHLILQNRGPGRPNDVAILVTGYSPVYTLLGWMPVHMAKQARYKHPHQNNYWVPRASLFEMKYLKRSNYGDI*

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