NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0105239_11547877

Scaffold Ga0105239_11547877


Overview

Basic Information
Taxon OID3300010375 Open in IMG/M
Scaffold IDGa0105239_11547877 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052754Metagenome142Y
F105965Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0105239_115478771F105965N/ADLHQLELDDWNRYGKARQKWEKHLRDPDDVFIHAEERRKELAKQRKKH*
Ga0105239_115478772F052754N/AKLLLMRFPFLLVTCFCGLLSFAKDAPKAMLVSHNDIKGPIIGNMHTEDFAIFADGRVRYSESGNDRKTATVNIRLTPAQLHRLTALLNSKEMRAVPAEIPSQIKVVDFDWEAQLNIQHASGRQTIAIKNFYPLLNTQRPTYPQALMEVECFLRDVQARATKRPVHTEDEDWCPEKTH*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.