NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105239_11967295

Scaffold Ga0105239_11967295


Overview

Basic Information
Taxon OID3300010375 Open in IMG/M
Scaffold IDGa0105239_11967295 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000573Metagenome / Metatranscriptome1016Y

Sequences

Protein IDFamilyRBSSequence
Ga0105239_119672951F000573N/AMVLSVVYDQEFEPVITFAFDAGRSITNWLDSLVSGTYWGQIAVNHLRERVNMTHVVLSVPAIVIATIFVGIPLNWFLGGTRSALQRIAIALVSVPATVVLAVTLFTFNALVPETYAALLRFADWIWQASLSALSSRGESIPGATKLVNIARQGFSGHHYVIMA
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