NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100021447

Scaffold Ga0126381_100021447


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100021447 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7570
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003435Metagenome / Metatranscriptome487Y
F016741Metagenome245Y
F044954Metagenome / Metatranscriptome153Y
F053442Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1000214471F053442GAGGVPIDTSLAVGFLRIVQVRASDPVKAEVRAVELVGSEWSSSAYAFENRGGTPHLTIVRIGLLSWWHRFLGAPSGFMFFAEDGVLMPSDKSFSPGGR*
Ga0126381_10002144710F016741N/AVRSFAGAFTELAFDLSLELRATGRADLARELEACTVKAVSYDPETDVGLIALEPQRQLTAVERNVIGQKLGQVISFADAPYASLQLDNFGRIVAVELVAPPRNLRWILRPASNYRWKRP*
Ga0126381_1000214472F044954GGAVFLLFAAPVVILVFVLAVPVAYRYLWPIKINRPQLFLVITLVMGLVIAGVAIFWLFSVLTGMGNTGATSQTAPTAAVESVLRNRLLVAAVFAVLVEYLLCRITHTIMGT*
Ga0126381_1000214475F003435N/AMRLTPETPALRRWRLWLGAIIVAEICWFALLRPRIESYRTVLVLALLPLTVVGYVYLMAAVSAHLADRRWDFRLRQMIVVMLGLSVGCFVFSLLWLAKVHFAAEVG*
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Institute for Fundamental Biomedical Research
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