NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100106902

Scaffold Ga0126381_100106902


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100106902 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3587
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010190Metagenome307Y
F017016Metagenome / Metatranscriptome243Y
F067306Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1001069024F017016AGGAGGMSNKAVMQMTDPEYTVEVDGEETYVMRNGVRLAMRRDDRWVSIEPGVTVRDVVENGKHGIEVRMTLH*
Ga0126381_1001069025F010190N/AMVDDDDEIHQRLSNGGRTHFDMDEAFCARMLKAIEAGLENAPIGVVTTPGTKNPRYVPTEPRPLVSSQRDMEHV*
Ga0126381_1001069029F067306GAGGVRTFLITMAGALVLGGCSSHSGGYTRTDGVAVDPLHQQATLAQCKSEGATAGVQVNTGGPIGMVERERKETAIVNACMARNGYIQTPQQ*
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