NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100226711

Scaffold Ga0126381_100226711


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100226711 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2516
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023500Metagenome209Y
F030632Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1002267113F030632GGALAAVMKATTVPGAEHYREIAGVLRQAAKLCLFDGARKEILHLAARFESRADHLDRRAESMTATRSV*
Ga0126381_1002267114F023500GGAGMRGLTLVLAGGLTLMTSAQGAPFAPNLTAIEVGATPPLELVRDGCGRGWHRTRWRDQWGNWQWGHCIPNGGSHDAWSAGWNYPSSDWRAVLPRWGWGNP*

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