NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126381_100292846

Scaffold Ga0126381_100292846


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100292846 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003045Metagenome / Metatranscriptome511Y
F017181Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1002928462F003045N/AVKVNDRQIKGTEMRAIRGYIIAALPALALLTSYASAKGTNSTDVIIQLRLAGDVAALPLIRSCLIKRLSQMPDVKVATAGTEGARFVVDIVAATNTNKKMSASLVVAEIFPMEQFQPRMKEGENAAALLTSIQYYTLLRMHEVIPARSDEALCLSIAADIGDQVLSKEYTERND*
Ga0126381_1002928464F017181GGAGGMLTCKGRALVTAIQDHLIELYVQQDEARREHDPDRAHDLQVEIDKATAQQEEIRR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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