NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126381_100612156

Scaffold Ga0126381_100612156


Overview

Basic Information
Taxon OID3300010376 Open in IMG/M
Scaffold IDGa0126381_100612156 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000674Metagenome / Metatranscriptome941Y
F000778Metagenome / Metatranscriptome895Y
F014102Metagenome / Metatranscriptome265N

Sequences

Protein IDFamilyRBSSequence
Ga0126381_1006121561F000778N/ARFSLMSSDRVIVDAIKMAQRLLWQNLPPTHSLPDATTVMRFRDLVRSPAIQSALERSSDTFPAFTLRAVQRVLADQSQTDREIISRLWDVLDETDLKQALGLPQNSRIAFGPYPKRR*
Ga0126381_1006121562F000674GAGMNLRSSVAVTAMLAAHPTAAQDHRFETDPVVTVRENFVACDVLSQLQRVMDNPRFLLTGECEPLSAGRRVRIYASRGSYVCIYPEDTITPCKWTHEKVLSK*
Ga0126381_1006121563F014102GAGGMREEYASLSLVMNTRLDTCMEALRFLARSSELQANRLLTAELRIRDFLTSVGANRAAQRAALEELDNAVSREAELRPREASFWQEISDFIARRLATLNFD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.