NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126330_10017674

Scaffold Ga0126330_10017674


Overview

Basic Information
Taxon OID3300010378 Open in IMG/M
Scaffold IDGa0126330_10017674 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-91 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3384
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameHawaii, USA
CoordinatesLat. (o)21.3935Long. (o)-157.7156Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003194Metagenome501Y
F080736Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0126330_100176743F003194GGAMKVLRKVVYMTKSSGPRTEPWGTPQEDVYQEDRSVSHLSRKQRDDRFDLNQLRTEPWKPNQDERRVIKMSWSIVSKAVERSSRQRHDTFCDPR*
Ga0126330_100176744F080736GGAGGVLEDLQSSRTKFDLEHCEGDLCWSRSESEGRKERAECHLRRGDGLGNKKK*

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