Basic Information | |
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Taxon OID | 3300010379 Open in IMG/M |
Scaffold ID | Ga0136449_100000188 Open in IMG/M |
Source Dataset Name | Sb_50d combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 150545 |
Total Scaffold Genes | 159 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 90 (56.60%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000840 | Metagenome / Metatranscriptome | 866 | Y |
F014041 | Metagenome / Metatranscriptome | 266 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136449_100000188127 | F000840 | N/A | MIASTITPTVSLEERIAKTQLLLRFMEEDQPHLHARLSALGAEHRQSANAFADRLRAEAEAELQRLLAERGLPHQSSLPQSAD* |
Ga0136449_10000018869 | F014041 | N/A | MEQWDNKKTMKDRDASRHPGPFRIMQVDSEIAGLLVAVGFLVMGFVSMPIGTGFVLGAVALGVIVALLLRFTPRTFRRIVLGSVIILIAVALFWEGRKPRSPRRPPTVSSDALYVLPDNVPSTLQKTGYWVDCWFDEHANVDRCKLADEKGTVSFEDVFLPCIGKEPLHQSVFVFNGRRLWTASIWNRSPEKGTKVPVVFVNGQVLLPRNFYTEAKRDVYCPPI* |
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