NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136449_100000440

Scaffold Ga0136449_100000440


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100000440 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113944
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (70.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002480Metagenome / Metatranscriptome555Y
F008196Metagenome / Metatranscriptome337Y
F024747Metagenome / Metatranscriptome204Y
F029881Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_10000044048F008196AGGAGMRNLVLVVLSLVVSGSLAMSQSKVDTKWHCLKATAEHKLDVGDAPDHSLWIGQGSCEATGSSGDLKEKSGSFTEFHDAWKTSFNFHGYYNATTDDGDKVHYTYEGSASTEATKPPSNKWKIVGGTGKNKGIKGSGTCAGKGNADGSYDWECTGTYSVGMAKMDKMEKMDKMK*
Ga0136449_10000044050F029881GAGGMPILLMALLALLVFGVIGILLTAAVVLENSKRARVARSNAAHPVTPGAVPTLNPKLR*
Ga0136449_10000044081F002480GGAVLRFSNGQTAGAKLQVISLTGGLLSLPQPVVQGTQVKLIFLTGGGAVLGGAEMLRPVTSGLQPFRFVSLAADDHRRLGALIGQQSSQNESELAWIEKLRAASAQQREPRRWRFKVAELVGMLMIGLATAAYLLHLALLK*
Ga0136449_10000044082F024747GAGLQVISLTGGLLYLSRPVDKGAQIKLMFLTRSGSVLGAAEMLSCDTWGLQPFKFVRLYDDDECRLQAAIQSSLDQNRHDHGQIERYRYW*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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