Basic Information | |
---|---|
Taxon OID | 3300010379 Open in IMG/M |
Scaffold ID | Ga0136449_100002267 Open in IMG/M |
Source Dataset Name | Sb_50d combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 58177 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (60.42%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001471 | Metagenome / Metatranscriptome | 688 | Y |
F008728 | Metagenome / Metatranscriptome | 329 | Y |
F013438 | Metagenome / Metatranscriptome | 271 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0136449_10000226714 | F008728 | GGAG | MGSLPVRSHLEKGISELQGLHEVLLHGDLDPRVLADFRDALNRVRTAAWAAQQYVVRKEIDHDSISVLSFLAGERIRAGYQLCQAIGDDLKRTDIKFQAGSLVQLHEATKTLTEQLNGIIKKLG* |
Ga0136449_1000022672 | F001471 | AGGAG | MMKMKVIVAACIFLALALPAFGKTSKNTYPAPCSDLWGAVKDVLGNAENYNVEESNDTLMTAAYKVKHNVHVTVTGAVLQRTNHVSLVSKGTECEMQVKSNYSGFEHDDSGDFRKRVEESFAKLKGSNPAQPPQPATPAK* |
Ga0136449_1000022676 | F013438 | AGG | MNRLYQWLSGRASFFRSDTSGRGTSRTVRTEVTVEQQAMTLLVGSAAAAGFDICPLCGSKLTPMQAEQRSGRLLNSSISQEAGPVDSPPP* |
⦗Top⦘ |