NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136449_100660730

Scaffold Ga0136449_100660730


Overview

Basic Information
Taxon OID3300010379 Open in IMG/M
Scaffold IDGa0136449_100660730 Open in IMG/M
Source Dataset NameSb_50d combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1764
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004018Metagenome / Metatranscriptome457Y
F096277Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0136449_1006607301F004018GGAMLGRLDEGVFFMTTTTRRAYWGVLALVFVLVFSIGLFAQSRSAAGSTSPSPVARDLNSTLAELMRAAPATSQDLTSLERPGGRLHWVTFWRGENAQQAQMTAALRRNLQFAVPALIQDAQASGGSISTTFKLYKDLTVVCESLDSLLPPGSRERNTELTALRNDISDMNRLGQELSSYIQQTAASMESKNAQLVSSAGRSPKRVI
Ga0136449_1006607303F096277N/AESVVRWSGDGRYLFLQQREPTSIKISRLDVTPRRKEPWLVVKVPEPGAQFLGPLALSADGKAYAATFQRDLANLFLVRGLK*
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