NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1000342

Scaffold Ga0136551_1000342


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1000342 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13666
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (72.97%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F001562Metagenome / Metatranscriptome670Y
F002071Metagenome / Metatranscriptome596Y
F038205Metagenome / Metatranscriptome166Y
F043387Metagenome / Metatranscriptome156Y
F057310Metagenome / Metatranscriptome136Y
F063685Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_100034210F000450GGCGGMGDRANFGFVQSNGNTIVLYGHWAGYNMLGKLADAVIAARPRWNDESYATRIAISQLVADQWNMETGWGMYVNEIGDNEHKIAIVDFNQQTFSLHEEDHRGNEDNKISGMKNDAIFTMDLSTFCEKYAMENILVV*
Ga0136551_100034212F001043GGAMSDYRDGFQDGYKFAREEIIEKLREIDIADIDAYLLDRLSDMIESNKI*
Ga0136551_100034213F000311AGAAGGMYFELTAPNQVAFKRAIWEADIIGLDPQEMQSLTFNIGTGSIEKVSRIRDKHNLVESYVADYEPTGYLRGI*
Ga0136551_100034220F002071AGGAMEIGTTYTTTNSGITGVIKAIDNHPSGVNRILLDVNGTDRWTSVRA*
Ga0136551_100034227F038205AGGAMGNLSEIIGVACDDCGGAGFIFWGDENNYDVESCDCALEMWGI*
Ga0136551_100034228F000447N/AMGYIEIFRLNDEGAGWVDLSEATPAELLDLEIGLFQEGAFD*
Ga0136551_100034230F001562GAGMKSQLEKDIEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLREEGHIE*
Ga0136551_100034232F063685GGAGGMSEGFFTIEIDNYGFMLDTEWAYIALSWQLLTLTALVVIGYKIYKRKKNK*
Ga0136551_100034233F043387AGGAMMTKWDTIQADISDAYTYLDEQEALDKHNSETLFDEDMISMDEVIEKGLTLDWEEYE*
Ga0136551_100034234F057310GAGGMKITYSIWQGSLMKGHTLTASKMSEVIATIKELNESGLSPKFEAFISKIEQDNN*
Ga0136551_10003429F000868AGGAMSEVSFLENENQMVIDAELQTIAEQLLDDWIYENLNEGQFYADWRIADMVDSNYLKGRFNKHYNLTPTDEYYIEYDEEA*
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