NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1001228

Scaffold Ga0136551_1001228


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1001228 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6695
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003784Metagenome468Y
F041090Metagenome160Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_100122811F001477AGGAGGMSNVYAFHPVKSPLINLYEIVEPNGGAEWGGNDPYDAITWLRLAPEGSRVLVSGWESDEEDAHLVGQPIDITDIIKQAREVGR*
Ga0136551_100122815F093483AGGCGGMTIERVRHSGAVIVSALVSWEGVKWLESATYYGYTIREAKASFRDSCNRLNYEIES*
Ga0136551_10012282F003784GAGMDSNATDYSAYGLSHLKPGPEHRDNNYSPNPNPLVDHPAVIDYRTAGVTTDDLVSFIESFASLRASRVKKIGHDQYSHAKGQKFESFTATDTVRELIEELADASNYIDFLAIKLLNLASTMEQSEVNCD*
Ga0136551_10012288F041090AGGAGGVRTEELSSNIVKLSDIRRERARACSPYGPVRAGLTTSQRIVEDRQLTELLSSLESVVASLNSKSSTVLDTLESAIQGARVALSASTPDTVGTS*
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