NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1006017

Scaffold Ga0136551_1006017


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1006017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2692
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F009685Metagenome / Metatranscriptome314Y
F033433Metagenome / Metatranscriptome177Y
F084239Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0136551_10060173F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALQEAESKGIQFTAEKVNKAK*
Ga0136551_10060174F009685GAGGMKMSDQYVDTVLAEAQRLLWGGSETENIKAHNLIAKLIKDRSEKVEIDLS*
Ga0136551_10060176F033433N/AVSLEILEVNYSISPGGADEFEVYPANEQYYVGGPLYSSTSLMEAVKYCYELGKDFTVRTLAQWEERELAYEA*
Ga0136551_10060177F000263N/AMNNMNAEDIGLPPHLQRMVNARVSGLDILHGELKNLMLIAEQNLAEAQALEDESEEAMDSMERTRCEGVLDALVDIYNLTYQLSFAIGEQIEV*
Ga0136551_10060178F084239GAGGMTRSSAFLEYMKLHEISLMQDLEKIDYVNEHHFYRVKEAEIYNTRHLLSVALDIMKSSNERYE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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