NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1007909

Scaffold Ga0136551_1007909


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1007909 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2285
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y
F020167Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_10079093F000311GGAGGMYFELAAKTSRSFRKAVWEAEIMGLDPEELDSLTFNIGTGSIEKVTNLREKYNLTEVYVSEFEPTGY*
Ga0136551_10079094F007470AGGAGVDYQDGFQDGVKFAREVVIANIRKWAEDHDEGATVDWVADRIEFGTLDNDL*
Ga0136551_10079096F000450GAGGVGDRANFVFVQPNGETIVLYGHWAGHNMLAKLADAVIAARPRWNDNSYATRIAISQLIGDQWNMETGWGLSVNTIQDNEHKIPVVDFEQQTFSLHEEAPYNDPSSKVKGMNNDAIFTQDLSSFCEKYADQLILT*
Ga0136551_10079097F020167N/AMNTNDLINEIYMDNEQHLEYMENMNGGDCDCSIHITLNTICRYAGI
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