Scaffold Ga0136549

Basic Information
Taxon OID	3300010389 Open in IMG/M
Scaffold ID	Ga0136549_10000402 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31515
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (44.05%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

31515

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (44.05%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Baltimore Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	38.05018333	Long. (^o)	-73.82193333	Alt. (m)	Depth (m)	.12 to .14
Location on Map

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Source Dataset Sampling Location

Location Name

Baltimore Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

38.05018333

Long. (^o)

-73.82193333

Alt. (m)

Depth (m)

.12 to .14

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F001968	Metagenome / Metatranscriptome	610	Y
F034753	Metagenome	174	Y
F037196	Metagenome / Metatranscriptome	168	Y
F066743	Metagenome / Metatranscriptome	126	Y
F071779	Metagenome / Metatranscriptome	122	Y
F088534	Metagenome / Metatranscriptome	109	Y
F093767	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136549_1000040216	F088534	N/A	MFSTTITNPQTFGNTYQWAILSVLPMDSDKNQHGLNSPEIKSALGLSNAARTSLCLMMKEMAGKGLVQRYDYKVGNRRFVTYKRILPLRKRERIARFLGL*
Ga0136549_1000040223	F001968	N/A	MFDELWNEIQETPGEIFDILELQEEQENFDFDGYLAADYDY*
Ga0136549_1000040224	F037196	N/A	MTKTTITLDQFHDLLSDAYAVCVNDTLYFVGYDMDDNPYIANNDGDDYVDLSTVDGDIEVHPNYVFFYIQEQPIQMVFLQIKKPV*
Ga0136549_1000040230	F071779	N/A	MTTKTTYRVIGFGTNEHGFFNEFAFCSTIGYACGFYDAHLQDPEMDGAVIIRVNHEDWEVIQEFGTIPYSVVYGPLGTFKVERAVDMVMV*
Ga0136549_1000040244	F066743	AGTAG	MVEVEMTQEQLIQSIEQQLENLMHFDDDLAYQYDCDLYYEVADDEEPIPIVEAFTPELLKELEDLVYRLDTQKENN*
Ga0136549_1000040261	F034753	N/A	MRDLITKLTEDYQQKSTYWTGSLFEEVVKLSTDYKGKYGEELMRNIILKYTDIPVQWDEDSNTSNDDGVYDLFWFLHNGKKRRNEIKTSGRTVSKGVAKGWQHENIYFTDNKWDLATFIDYDANDVIYITIVRYDEIVTDNKINLAIFGKNGHCRKNETGKAKVDFSMRSIAHGIKAGVTFKYDLNQPDDDLLSFFLLSKLIGNE*
Ga0136549_1000040271	F001881	N/A	MTERAQEFMNAVWEHRNNGANTEEKLVAAILLIAAENIRSYTAQNDLIVLDKNDLLSLAEELNA*
Ga0136549_1000040274	F093767	N/A	MLDAKDKLIQVKLYSPHKCEFICERENGTHYVYRRLDDEEYYQLHPNPTGETKWLWGEKIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136549_10000402

Overview

Ecosystem & Geography

Associated Families

Sequences