NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10001225

Scaffold Ga0136549_10001225


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10001225 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19188
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (28.26%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013631Metagenome / Metatranscriptome269Y
F015080Metagenome / Metatranscriptome257Y
F027828Metagenome / Metatranscriptome193Y
F031454Metagenome / Metatranscriptome182Y
F048940Metagenome / Metatranscriptome147Y
F084145Metagenome / Metatranscriptome112Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0136549_1000122517F013631AGGAGMILDVFHYTTSRWDWIDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDASMVMSEPRCYADTLAFVRKWCNSFCILPEFSVAA*
Ga0136549_1000122523F027828N/AMLDKVLMVEELLNEKQLAALRDMLYVYKGLQSEVHNYPPEDTLFTKTQFEIFDIFDIK*
Ga0136549_1000122527F101038N/AMELTNSFPPVDAMVKKLQEFNYVKFGDNVVKYSVTAFAIAVAVSSYLWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLIDSLFFQVALA*
Ga0136549_1000122534F084145N/AMFVICPKSFDLIDAEWFDTVYEAKEEALDWSVELSGESVIVYEAIEEEEGAYDFQKRYSICA*
Ga0136549_1000122538F015080N/AMFNQLQFKAHNLPGAIQATYTFSNGWMISVVSGGPLYGRIEDDTYEVAIFRPNGNMTEDVIGWNTKDEVSAMMKVLVQL*
Ga0136549_1000122540F048940GAGMTTAQRMEKQFFKNFIVLINEVQGKSKLPSQAYSTRKSAWVKQITNPRQKVDALSRV*
Ga0136549_1000122542F031454GAGMHDSTLDLFCNSDDEIFADEYAQEFEEKANSLEITVDYYLMEFV*
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