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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010389 Open in IMG/M |
| Scaffold ID | Ga0136549_10037630 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2625 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Baltimore Canyon, US Atlantic Margin | |||||||
| Coordinates | Lat. (o) | 38.05018333 | Long. (o) | -73.82193333 | Alt. (m) | Depth (m) | .12 to .14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F038646 | Metagenome | 165 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136549_100376304 | F002333 | N/A | MSTQLQQELNAAQASIYSRTNIRRAYPDFDDTEIGGIYLRGDDCIVVRRDGSQQAYQRSLIKQAFSSYTHRLKDFFSYLGPNYRGPSVWHNNAYIIFKGWTYTHALGHLSSNAKLQGHWADKFIHLSDPAKVTALLQSDQTDLGHLVAPDGMRLPDRALDMESELDDVQEQKPVLGEPSCSCGSFQRQLSNLSSFQEEIQGFKPWCIHLTWFNKYRELLSKRTEVRNASPSGTPEKCVAWWYAPPSDHTSDGRFLLLHTKSGAQAPLSHWRTYKPSEVFTQHNAWDLFFNMMEAGYAPFPGTCLPQLKNAFKK* |
| Ga0136549_100376305 | F038646 | N/A | MTERFSMQAPDDILEYARQLVANQPMKTPEHHNYHLDIPNDLHWELVRLGAELKMDYEVYAEEILKMHAEDAISKRIVAKAYNDPSWVTKLKLECIDEPDGTMTIHIEWDENDPDLLYWTNLGAKGQENFILTALRSACDSVLSDHDD* |
| Ga0136549_100376306 | F002738 | N/A | MTIDTYGLTSDQYEEFFEKNIRLAAQLYLKAQNIIFSSGVSNADFKTILDLYNETVYATNDDCRRYQKSNNPEALKEATVEIFGITPTREELMAEIQSVNAKVEALTDYVAKLVEITTNGLNGVVETLEG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |