NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136549_10064016

Scaffold Ga0136549_10064016


Overview

Basic Information
Taxon OID3300010389 Open in IMG/M
Scaffold IDGa0136549_10064016 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1838
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameBaltimore Canyon, US Atlantic Margin
CoordinatesLat. (o)38.05018333Long. (o)-73.82193333Alt. (m)Depth (m).12 to .14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009045Metagenome / Metatranscriptome324N
F030153Metagenome / Metatranscriptome186Y
F072288Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0136549_100640161F009045GGAGMNKLSENFTPSRTFRGNRHSVKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSR*
Ga0136549_100640162F072288AGGAGGMRDFDSNGELDILEEIKDEILNKLDEGLRDTPYSTFTENYLAKSLVDRGLADSRALPIAQAIEDNDMNALAFAVCACDTWNFPHLLKIEPRIFYMLLCEETDPVLIQRLEEVIK*
Ga0136549_100640164F030153GGGGGMSLIVDFTNIREDAKNELNQYQYHIGCYMMAIGMGEITQDNHLEVYARLVLLQASTLQYDKPWMTLDTVKALIGAEFNIAFESKAKFSSRMIKATLREVERLEAKEVKDVA*
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