NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118731_103669940

Scaffold Ga0118731_103669940


Overview

Basic Information
Taxon OID3300010392 Open in IMG/M
Scaffold IDGa0118731_103669940 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory, Brown University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4302
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location
Location NameRhode Island
CoordinatesLat. (o)40.435Long. (o)-70.483Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045540Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0118731_1036699404F045540N/AVNKYIYTLATLLDSKARIKKHYSSDIIISDLFDENLDEIDWILTLSELELIYGFEIPDELYDRTDLTLEQFAKELSQLPIISDELYPEFFDIKFTAMKLTKKAIVLEVKTDQESIKELKEINSKFEELTIRLNMILENNYHQELLVN*
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