NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118731_107724492

Scaffold Ga0118731_107724492


Overview

Basic Information
Taxon OID3300010392 Open in IMG/M
Scaffold IDGa0118731_107724492 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory, Brown University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1196
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location
Location NameRhode Island
CoordinatesLat. (o)40.435Long. (o)-70.483Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007750Metagenome345Y
F021299Metagenome / Metatranscriptome219N
F058285Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0118731_1077244921F058285AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALV
Ga0118731_1077244922F007750AGGAGGLAFLGDFGKFFGLGTTADVGENAGKAIAAGLGLPPEAGGKIGRSIGSTVGDIGSDGSSASPLSTADQALEQSAVPVSNRGDVPQELSTMTGTRGMTTQAGFGALAPLFGTASRFLGSKSGQLVTGVGTAVGLGTANFMGSDSRMKPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSMNVNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRTGSTTLIKN*
Ga0118731_1077244923F021299N/AGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG*
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