NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134126_11164064

Scaffold Ga0134126_11164064


Overview

Basic Information
Taxon OID3300010396 Open in IMG/M
Scaffold IDGa0134126_11164064 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040571Metagenome / Metatranscriptome161Y
F062641Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0134126_111640641F062641N/AMIDLGTISRVLAALGGLWDRAQQYLPLMQEIALPLAALVFTFSMLQVFLQDDTEEDYFRIMGRFGITLAILAEYPALFDQFNQMSSSLAHYFADPNSFQNFFQQLQAQMTGLDGVISFTWALSSSITTLLAL
Ga0134126_111640642F040571N/ALQRDFRSVLVDPSTIRHDIEGSYGVTPGNFPLSRQKRIDAADATATMGLFDASRMELVAEQEETDADDLESRATEASPGGAAKLSAAADGALLRSQAYDHRLLARLMRLQALAIARDNSIEKEQEQIRQEQLTTVSNMIGGMQLSYGLGDTVHQ*

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