NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134124_11163024

Scaffold Ga0134124_11163024


Overview

Basic Information
Taxon OID3300010397 Open in IMG/M
Scaffold IDGa0134124_11163024 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)790
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000661Metagenome / Metatranscriptome950Y
F069583Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0134124_111630241F069583N/ANPPNWTLNSCFHVFCSIWVHLGLFGCLTRCKTGRTGAQVRATKLSQNFSKQTQPIRPHWTLNSCFCAFHTIWVHLGLFGCVTTLSLKRVKLVQKFGTRSRVRIFRNEHTRSSPLDPKLIFLCISYYFSVVGTVWLARKT*
Ga0134124_111630242F000661AGTAGGLVGSQNLMENRQNWCECSCHEVALELFATNAPDPPHWTLNSCFGAFHTIWVHLGPFGCIKKLEAKRAKLVQKFVSRSHFGIFRNECTRSTPLEPKLMFWHVSYNFDAFGTVWLARKSRWKTGRTNAKVRA
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