NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126383_10002052

Scaffold Ga0126383_10002052


Overview

Basic Information
Taxon OID3300010398 Open in IMG/M
Scaffold IDGa0126383_10002052 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12867
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034740Metagenome174Y
F047937Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0126383_100020525F034740N/ALLSVTLLGAIQTTPSGSSQAAGSQAGAANAAENAQIRQLGNNRGNDAQAQRDDIRKMRALLAQMQTNLAFVDSTQSPLKHQFQLDIDMWNVVINEMERRSYPNSR*
Ga0126383_100020528F047937GGAMKRYYRAIAVIGMAALCVCAFASQATSAQTQPQKATAKAPIQTFVGIISDGQCAVKGSHKEVMAKAKVNTSANCVKGCARRYGYVLYVPSTKKIYKLSDQERPAELAAKKVRIKGALDKSTQTIYVSSIEPVL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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