Scaffold Ga0134122_10019238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134122_10019238

Scaffold Ga0134122_10019238

Overview

Basic Information
Taxon OID	3300010400 Open in IMG/M
Scaffold ID	Ga0134122_10019238 Open in IMG/M
Source Dataset Name	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5122
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Kellog Biological Station, Michigan
Coordinates	Lat. (^o)	42.3938	Long. (^o)	-85.3708	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000195	Metagenome / Metatranscriptome	1659	Y
F001972	Metagenome / Metatranscriptome	609	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134122_100192381	F001972	GGAGG	MKALTRNTLLAIPLALVVMVMLPRHGTFLWDFLDAFTLAFSFTYVGHLVEVLLLRLPGIETSSGKVVRVFGWFAGGLWCYVLARWALHLYGRDTSELPSLLWGGLFFVGLEFVVHGLLQASGKPNFYSGQLQEVDTTPAR
Ga0134122_100192383	F000195	N/A	MDLAVTRQQYDAVRNAKHLPDVLKSVLDNATKNASGHVLHLTYEEATALNELAAWNVHTGSDGKVTPESQLFDDLVRAILTHPEY*

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