Basic Information | |
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Taxon OID | 3300010400 Open in IMG/M |
Scaffold ID | Ga0134122_10034558 Open in IMG/M |
Source Dataset Name | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3839 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Kellog Biological Station, Michigan | |||||||
Coordinates | Lat. (o) | 42.3938 | Long. (o) | -85.3708 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002508 | Metagenome / Metatranscriptome | 553 | Y |
F009024 | Metagenome / Metatranscriptome | 324 | Y |
F025358 | Metagenome / Metatranscriptome | 202 | Y |
F057625 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0134122_100345583 | F025358 | GGAG | MRGVAALIFYMLGLGAVVSFGIAGLMALQSPTVPAPPAPVTAATPHKERVAKPAKETTQKDAQSNQKRKAVNATRKRREEAPTISSSGLDAYGSANEPRYFYQHPFRFFGR* |
Ga0134122_100345584 | F009024 | N/A | MHNSDYYREQAEYYRQLAQSVDDPAAKQEFLELAVACEEAADKMDDCRASG* |
Ga0134122_100345585 | F002508 | AGGA | MYARWRNSDVSRNFHRLGLLVAAIILMTGLLLMAKDALGLRFWDLIPADIPILAGGIAIGLTGIGLVSLAAYGIVRAIGWTIDKSV* |
Ga0134122_100345587 | F057625 | AGG | MNNTRRTRNFTPSDDALILEQPVNGIGIRTLATMLNTSPEMLARRAGELGVSLAISDDHDDAADTRALSCRDKRLVDPLLERLKQVHGDRKQAVATP* |
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