NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134122_10119125

Scaffold Ga0134122_10119125


Overview

Basic Information
Taxon OID3300010400 Open in IMG/M
Scaffold IDGa0134122_10119125 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2113
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007674Metagenome / Metatranscriptome347Y
F090523Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0134122_101191251F007674GAGGVLARELTQLQKLIGERCKRLRRDALELGRRFYAEPSKAFAKRISIFAGNRT*
Ga0134122_101191254F090523AGAAGMRKSLRELSRSYLAGERTVEFTIEALLFAIIVAISAWPVLAAANALGEFLQQV*

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